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Question: Path Issue In Xml Tool File
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gravatar for Erick Antezana
9.7 years ago by
Erick Antezana • 120
Erick Antezana • 120 wrote:
Hi, while defining my own XML tool (.../galaxy/tools/my_tool.xml) I need, apparently?, to have a copy of the tool in the same location so that the XML section dedicated to call the command could find it my_script.sh): my_script.sh -p1 $p1 -p2 $p2 -p3 $p3 is there a way to avoid such situation withou creating a wrapper and calling directly the tool/script? If I want to make a call to programs like blast, srs, etc, it won't be wise to have a copy of them in that location... For the moment, I created a simple shell script that actually calls the program required witht the arguments coming from galaxy... thanks, Erick
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modified 9.7 years ago • written 9.7 years ago by Erick Antezana • 120
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gravatar for Erick Antezana
9.7 years ago by
Erick Antezana • 120
Erick Antezana • 120 wrote:
Hi Chris, Actually, I tried originally to call my programs in that way and galaxy gave me messages like this /path/to/my/tool: /path/to/my/tool: cannot execute binary file But now I tried once more and I have just realised that I forgot to delete the 'interpreter="sh"' ;-) Now it works! Thanks for the heads up! cheers, Erick
ADD COMMENT • link written 9.7 years ago by Erick Antezana • 120
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