Question: my tools don't locate module install by conda in mulled environement
0
gravatar for Justine.POLLET
13 days ago by
Justine.POLLET0 wrote:

Hello, i have a local instance of galaxy and have some perl tools in it . I am constrain to precise the mulled environment ( create by conda ) PATH in my tools script, if not i have an error like :

Can't locate xxxx.pm in @INC (you may need to install the xxx::xxx module)

But i have to find an another solution instead precise the path in my script because my tools will migrate in a development galaxy instance and then in a production galaxy instance.

ADD COMMENTlink modified 8 days ago by n.goue50 • written 13 days ago by Justine.POLLET0
1
gravatar for n.goue
8 days ago by
n.goue50
n.goue50 wrote:

Hi,

One possible solution is to update the first line in the perl script by replacing #!/usr/bin/perl by #!/usr/bin/env perl

Check here for best practices : https://github.com/bgruening/coding_for_big_data

Cheers,

ADD COMMENTlink written 8 days ago by n.goue50
0
gravatar for Jennifer Hillman Jackson
13 days ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

A question very similar yours was asked at the IUC Gitter channel a bit earlier. Maybe this is yours? If not, please join the conversation, the solution will likely be the same. https://gitter.im/galaxy-iuc/iuc?at=5b17e77935e25f3997535565

If you don't think these are the same, you could post a new question or follow up in that same thread and explain. I would normally suggest using the primary GalaxyProject Gitter channel here: https://gitter.im/galaxyproject/Lobby, but this conversation is going on right now in the other channel.

This has come up before and they can help. Jen, Galaxy team

ADD COMMENTlink written 13 days ago by Jennifer Hillman Jackson25k
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