Question: my tools don't locate module install by conda in mulled environement
gravatar for Justine.POLLET
5 months ago by
Justine.POLLET0 wrote:

Hello, i have a local instance of galaxy and have some perl tools in it . I am constrain to precise the mulled environment ( create by conda ) PATH in my tools script, if not i have an error like :

Can't locate in @INC (you may need to install the xxx::xxx module)

But i have to find an another solution instead precise the path in my script because my tools will migrate in a development galaxy instance and then in a production galaxy instance.

ADD COMMENTlink modified 5 months ago by n.goue50 • written 5 months ago by Justine.POLLET0
gravatar for n.goue
5 months ago by
n.goue50 wrote:


One possible solution is to update the first line in the perl script by replacing #!/usr/bin/perl by #!/usr/bin/env perl

Check here for best practices :


ADD COMMENTlink written 5 months ago by n.goue50
gravatar for Jennifer Hillman Jackson
5 months ago by
United States
Jennifer Hillman Jackson25k wrote:


A question very similar yours was asked at the IUC Gitter channel a bit earlier. Maybe this is yours? If not, please join the conversation, the solution will likely be the same.

If you don't think these are the same, you could post a new question or follow up in that same thread and explain. I would normally suggest using the primary GalaxyProject Gitter channel here:, but this conversation is going on right now in the other channel.

This has come up before and they can help. Jen, Galaxy team

ADD COMMENTlink written 5 months ago by Jennifer Hillman Jackson25k
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