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• TopHat - set metadata manually or retry auto-detection
  "An error occurred setting the metadata for this dataset Set it manually or retry auto-detection"...
• Error during tophat
  What is the best course of action for the following error after tophat for RNA-seq analysis? An ...
• Error in Tophat
  Hello, I have been trying to run the same workflow to convert FASTQ files to Tophat for a few we...
• analysis of tophat results
  hi i have done qc and then groomed single end sra sequences from ebi. i ran tophat. i am getting...
• Problem with Tophat
  I'm trying follow the steps of the example from the Galaxy Training on RNAseq. After loading the...
• Problems with Tophat
  Hello, I submitted a Tophat job recently and received the following error: An error occurred se...
• Trinity- error setting metadata
  Hello, I was finally able to get Trinity to run, but I've encountered an error. => "An error ...
• Cannot set metadata on .bcf output from mpileup
  Hi    I am trying to use mpileup> bcf tools view to call variants on a cloudman instance. I...
• Problem with chimera.vsearch command
  Hi, I have a problem with Chimera.Vsearch command. The galaxy tell me: "An error occurred setting...
• Errors in post alignment files
  Hello. I was trying to perform an alignment of data (Tophat) which had been run through Fast Gro...
• Error running BWA-MEM or Bowtie2 in usegalaxy
  Hi, I am getting following errors while trying to run BWA-MEM or bowtie2 in usegalaxy. The input...
• Error with setting metadata
  Hi, I recently setup a TopHat alignment of my RNA-seq data, but when I use Cufflinks on this dat...
• SAM-to-BAM; an error occurred setting the metadata for this dataset.
  Hi. I am very new to Galaxy and am following a simple workflow for processing FASTQ files: Step ...
• TopHat error: "An error occurred setting the metadata for this dataset"
  Hi, I attempted to use TopHat today and got an error message which said "An error occurred setti...
• BEDTools: BED TO BAM Converter
  Hey guys! I'm trying to convert a BED file that i downloaded from epigenome roadmap to a bam file...
• RNA-star mapped.bam problems
  I'm trying to use RNA-star but keep getting the following error message "An error occurred setti...
• Tophat errors with alignment summary and insertions data
  Hello, I have encountered a problem after using Tophat. I started off with fasta file of my geno...
• Using filtered data for TopHat
  Hi, When I extract DRR data using "Extract reads in FASTQ/A format from NCBI SRA," for TopHat, ...
• Can't auto detect metadata
  Hi, I ran Tophat on my RNAseq data and an error occurred setting the metadata. This has happened ...
• cummerbund tool error
  Hello, I recently tried differential gene expression analysis using an established workflow. I h...
• .Bam File Upload And Use Problem
  Recently I was trying to use Galaxy for my data analysis but ran into problems..... Condition: I...
• Information request about new storage system copy
  Hello, I've been following the posts about the file copy... Five instances of the Tophat analysis...
• galaxy_filter_sam report error
  Hi, Recently, I try to use samtools: Filter SAM or BAM, output SAM or BAM, but it reported that:...
• An error occurred setting the metadata for FIlter Bam/SAM files
  I am getting error in setting the metadata after filter BAM/SAM files. I tried using auto-detect ...