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• What does this HTseq-count error mean?
  I am running HTseq-count on galaxy cloud on some BAM files generated from galaxy Tophat. But I go...
• Reference annotation GFT GFF3 problem with tool HISAT
  I got the following error while running htseq count: I think it is my gtf file problem. How to fi...
• htseq-count crashed again and again
  htseq-count crashed again and again (Usegalaxy.org) Running output file from HiSat2, Runs fo...
• htseq-count unknown error
  I am trying to use htseq-count tool for gene quantification, but I have this error: **"Fatal err...
• Error with htseq-count
  When I run htseq-count in galaxy I keep getting errors. The line in the history will look as foll...
• HTSeq-count, maximum buffer size exceeded
  Hi all, I am new of RNA-seq analysis. I am running HTSeq-count on galaxy with defaut parameters....
• htseq-count: Error processing GFF file
  Hi! I am running htseq-count for a RNA-seq and I got this error: Fatal error: Unknown error occ...
• How to solve DESeq2 error
  For RNA analysis, I finished TopHat , HTseq-count. But When I run DESeq2 for two groups, error ca...
• An error with htseq
  Hello, I am doing RNA-seq analysis using use galaxy.org, I am trying to run htseq-count but in...
• htseq-count error with strand data
  Hi! I am running htseq-count for a RNA-seq and I got this error: Fatal error: Unknown error occ...
• htseq-count failed with error no exon found
  I am having trouble with htseq-count. My gff file i.e. [brassica juncea .gff file][1] does not co...
• Fatal Errors occurring with htseq analysis
  Hi, I am in the process of analyzing some RNAseq data. I uploaded the data and successfully mapp...
• htseq-count issues with Deseq2
  This is the first time im trying this but I keep running into issues. I'm running the htseq-count...
• Reference Annotation Sources for RNA-seq tools
  When running htseq count, I got this error message: Fatal error: Unknown error occured [bam_...
• HTSeq-Count: Maximum alignment buffer size exceeded while pairing SAM alignments
  Hi I'm working on Cloudman doing RNASeq analysis. I am trying to use htseq-count tool for gene q...
• Error when using HTseq-count
  Hello,  I am a newbie using a Galaxy Instance in the Amazon cloud and when I run HSseq-count I ge...
• Error: htseq-count exceeds memory buffer, Solution: Set sort option on tool form to Yes
  Hello, I am dealing with RNA-seq data and I was successfully able to align my raw FASTQ data to t...
• DESeq2 Fatal Error (undefined)
  I'm trying to run DESeq2 on one factor with two levels and I get the follow error message: Fata...
• Htseq-count error: [Errno 2] No such file or directory: 'name_sorted_alignment.bam'
  Dear all, I am facing this error while running HTseq-count on a BAM file obtained with Tophat: F...
• htseq-count with gff error
  Dear all. Please take a look at my errors: http://goo.gl/Oa2IxR In the link, you will see 2 ima...
• htseq-count not working
  I've been trying to use htseq-count but it is not working. It has been showing "!". Is something ...
• Inputs not recognized by tool
  I have uploaded two bam files to Galaxy to generate HTSeq counts. However, both my bam file and g...
• htseq-count did not work
  htseq-count Did not work for a long time, could you please inform me when I can use this tool?