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• pigtailed macaque reference genome
  Hello Will the pigtailed macaque genome be available in the reference genome list soon ? thanks ...
• HISAT2 reference genome unobtainable
  Trying to use HISAT2 - no reference genomes are available, how should I report this? Many thanks,...
• RNA-seq without a reference genome
  When looking for infectious agents, but many of the programs ask for a reference genome - which o...
• Reference genome not available on server -- Solution: use a Custom Reference Genome/Build
  To process Chipseq data, the refernce genome is missing in Galaxy. What should be done in this c...
• HISAT2 - no reference genome available
  HISAT2 does not have any options for a built-in reference genome. I need mm10. Source for the r...
• Galaxy GATK no reference genome availiable
  I would like to try the NGS: GATK Tools (beta) in usegalaxy.org, but there is no available refere...
• Where to download Human (Homo sapiens) (b38): hg38 reference genome file available for your RNA STAR?
  I would like to download that same exact reference genome file that is available for everyone to ...
• Cucumber Genome
  Hi, In the NGS mapping option with "lastz" I cannot find the Cucumber genome.* *Could you please...
• SAM-to-BAM (NGS: SAMtools)
  I am trying to convert my SAM file to BAM file and I want to use the built in genome, but there i...
• Run Megablast on Galaxy against local genome
  Hey, Does anyone know how I can run Megablast on Galaxy with a reference genome that is not yet ...
• Cucumber Genome
  Hi, In the NGS mapping option with "lastz" I cannot find the Cucumber genome.* *Could you please...
• Feature Update: Expanded Reference Genomes For Ngs Tools
  Feature Update: Expanded Reference Genomes for NGS Tools Expanded genome data is now available o...
• Chicken Reference Genome
  Dear Galaxy, I noticed upon uploading a FASTQ file that the ICGSC version of the 2011 November ...
• Using the S. cerevisiae (sacCer3) reference genome with snpEff
  Hello- I'm trying to using snpEff to analyze the effects of SNPs and Indels on yeast protein cod...
• Add Other Genomes To Galaxy
  Hi, Is there any chance to add a new genome reference to the Galaxy browser? I am working on the...
• HISAT2-reference genome not available in a local -- data must be installed first
  Hi everyone, When I'm trying to use in my local galaxy HISAT2 for mapping the reads I have an inf...
• reference genome in mpileup tool
  Hi I would like to know if it is possible to use a reference genome to do MPileup call variants i...
• Please add reference genome to Bowtie 2
  I would like to map my reads to a reference genome that is not available in the pull-down menu of...
• Realigner Target Creator in GATKtools
  Hi, I am attempting to realign with Realigner Target Creator in GATKtools. However, when I uploa...