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• Making Changes to Data Tables in Tools
  Lets say I wanted to have a tool that would install a genome and annotation information. And lets...
• Data Table Named 'Bowtie2_Indexes' Is Required By Tool But Not Configured
  I am getting this error in Bowtie2 and Tophat2: Data table named 'bowtie2_indexes' is required by...
• Removing Duplicate Lines From A Table
  Hi, I have a table and would like to remove duplicate lines based on values in the first column....
• I am having trouble with Cut, it does not seem to be recognizing a table I just created
  I am having trouble with Cut, it does not seem to be recognizing a table I just created Help!
• Describe Table Schema
  Tools: Get data: UCSC Main table browser: when you click on "describe table schema" button, rathe...
• Table Browser Difficulties
  Galaxy users: It appears that UCSC is having temporary difficulties. If you are trying to uploa...
• Having issues uploading csv files as tables into galaxy
  I am trying to upload some data sets that are in csv format and I am having issues with galaxy fo...
• FreeBayes returning an empty table
  Hi there, If I provide Freebayes with quality scores it gives me an empty table. If I don't provi...
• Failed: Bad Request (400)
  I try to download table file 5 cols and see Failed: Bad Request (400) The same problem with anoth...
• Retrieving Genomic Sequence Using Ucsc Table Browser
  I tried to retrieve a set of 20 bp length genomic sequences using the UCSC Table Browser, using...
• Enrichment analysis and Fisher's exact test
  I have a gene list and a table file with GO terms.  How can I make the gene list be used in the e...
• Not Able To Get Data From Ucsc Table Browser
  Hi, I'm trying to get data from UCSC table browser. However, the browser always show "Waiting fo...
• problem with Profile Annotaions
  The Profile Annotation tools requires that a parameter be chosen for "Choose Tables to Use" but t...
• find lowest diagnostic rank
  when we make a metagenomic analysis for a certain samples, during analysis we have a table compo...
• Biomart Results Come Back As Xml
  I expected my biomart data to be in table form so that I could easily join it with some UCSC tabl...
• Data managers tool: the content of data table disappear after restart Galaxy
  Hi there, I am developing a data managers tool to add trained data. The tool works and can creat...
• Table With Gene Count Reads
  Hi, I was wondering if there is any tool on Galaxy were I can obtain a table with how many rea...
• How to write tests for tools that access built-in data from the data tables
  I am writing a tool wrapper for a tool that allows as FASTA file input something from the data-ta...
• Using galaxy with Oracle database?
  Hello, lately I tried to connect our local Galaxy instance to our Oracle 12c database. I managed...