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Question: Data Table Named 'Bowtie2_Indexes' Is Required By Tool But Not Configured
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gravatar for Sachit Adhikari
6.1 years ago by
Sachit Adhikari • 320
Sachit Adhikari • 320 wrote:
I am getting this error in Bowtie2 and Tophat2: Data table named 'bowtie2_indexes' is required by tool but not configured Data table named 'tophat2_indexes' is required by tool but not configured. How can I solve it? Thanks
alignment bowtie • 857 views
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modified 6.1 years ago by Jeremy Goecks • 2.2k • written 6.1 years ago by Sachit Adhikari • 320
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gravatar for Jeremy Goecks
6.1 years ago by
Jeremy Goecks • 2.2k
Jeremy Goecks • 2.2k wrote:
You'll need to update the tool_data_table_conf.xml file in your Galaxy home directory. If you haven't made changes to the file, you can copy tool_data_table_conf.xml.sample to tool_data_table_conf.xml If you have made changes, add these entries to the file: -- <columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie2_indices.loc"/>
<columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie2_indices.loc"/>
-- Finally, please direct questions about local Galaxy installations to the galaxy-dev mailing list: galaxy-dev@bx.psu.edu Best, J.
ADD COMMENT • link written 6.1 years ago by Jeremy Goecks • 2.2k
Thanks but after adding those lines when I stop and started the server using --daemon mode, the server is not working? What might be the problem?
ADD REPLY • link written 6.1 years ago by Sachit Adhikari • 320
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