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Question: (Closed) NGS-QC and manipulatrion
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gravatar for sarasindh
4 months ago by
sarasindh • 0
sarasindh • 0 wrote:

What is the error meaning? Fatal error: Exit code 1 () Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/jobdir/020/238/20238648/_job_tmp -Xmx7g -Xms256m Failed to process EBI SRA_ SRR6374691 File_ ftp___ftp_sra_ebi_ac_uk_vol1_fastq_SRR637_001_SRR6374691_SRR6374691_1_fa
rna-seq • 143 views
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written 4 months ago by sarasindh • 0

Cross-post: https://gitter.im/galaxyproject/Lobby?at=5b5eb3c6defc9823f524b987

ADD REPLY • link written 4 months ago by Jennifer Hillman Jackson ♦ 25k

Hello sarasindh!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

PS: There is a known issue with this ENA Get Data Tool, please see the other post for details and a workaround
ADD REPLY • link written 4 months ago by Jennifer Hillman Jackson ♦ 25k

I am still facing the same issue. Could you please advice me regarding this?

ADD REPLY • link modified 12 weeks ago • written 12 weeks ago by sarasindh • 0

The tool has not been corrected yet to automatically assign fastqsanger.gz to imported data. Until fixed and the issue closed, you'll still need to change the datatype after upload and before using downstream tools. How to is linked in the other post.

ADD REPLY • link written 12 weeks ago by Jennifer Hillman Jackson ♦ 25k
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