Question: Volcano Plot help code
gravatar for anasofiamoreira94
3 days ago by
anasofiamoreira9410 wrote:

Good Morning, I'm sorry to disturb, but as anyone done these volcano plot? I'm only able to do the traditional one, i'm kind knew too these field. Thanks

ADD COMMENTlink modified 3 days ago by Jennifer Hillman Jackson24k • written 3 days ago by anasofiamoreira9410
gravatar for Jennifer Hillman Jackson
3 days ago by
United States
Jennifer Hillman Jackson24k wrote:


Which tool are you using, is it within Galaxy, and what tool are the inputs derived from? If you are following a Galaxy tutorial, please also share the link, and we might be able to help more.

Note that these plots when generated using CummerRbund SQLite output are problematic. Issue ticket here:

Current Galaxy tutorials: Those in the upper section will work at Galaxy Main Others may require the use of your own Galaxy with the appropriate configuration. Docker images exist for some tutorials, for example:

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3 days ago by Jennifer Hillman Jackson24k

Hello, I'm using r. I will check the links. Thanks, Ana Sofia

ADD REPLYlink written 2 days ago by anasofiamoreira9410

If you are interested in using R within Galaxy:

For general R usage help (commands, etc) -- try a more general bioinformatics forum such as or Or, you could just google for prior discussion/online manuals with "R volcano plot".

ADD REPLYlink modified 1 day ago • written 2 days ago by Jennifer Hillman Jackson24k
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