I new user in galaxy, so a i'm having a problem with it
I'm analysing NGS Data, so:
1 - I uploaded the files into my galaxy account
2 - Use Fastqc to verify quality
3 - Filtered the reads using Filter FASTQ - minimum score 30 - and cut 9 nt from 5' end
4 - Use Fastqc again to verify quality
Everything is ok ... the box plot from my reads are all ok in galaxy (all above 30) ...
But when i download my filtered file, the reads are all bellow 30, i'm getting only the bad ones, the good ones, stay in galaxy, there is no option to get the right file, it just download the wrong one
Some one could help me with this problem ??