Question: Error with inputs using Ballgown
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gravatar for 1501609747
15 days ago by
150160974720
150160974720 wrote:

ballgown Error in input. Please check that input contains all the required files for sample data 60: intron-level expression measurements

rna-seq galaxy ballgown • 45 views
ADD COMMENTlink modified 13 days ago by Jennifer Hillman Jackson24k • written 15 days ago by 150160974720
0
gravatar for Jennifer Hillman Jackson
13 days ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

The problem may be with the inputs or the tool itself (Ballgown, version 2.2.0). You'll need to check the inputs and make sure they are in the expected format with the expected content. That said, it may still fail if the problem is with one of the known problematic issues with the existing tool wrapper.

A new wrapper version is under development by the original tool author in collaboration with the IUC team. Please follow progress here: https://github.com/galaxyproject/tools-iuc/issues/1183

Thanks! Jen, Galaxy team

ADD COMMENTlink written 13 days ago by Jennifer Hillman Jackson24k

Input formats when using the tool in Galaxy are the same as when using the tool line-command as far as I know. Those specifications are here: https://bioconductor.org/packages/release/bioc/html/ballgown.html

ADD REPLYlink written 13 days ago by Jennifer Hillman Jackson24k
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