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Question: Getting other supported reference genomes for NGS plot on local galaxy
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gravatar for rossillom
9 months ago by
rossillom • 0
rossillom • 0 wrote:

Hello, I have downloaded the gz tar of the ce10 build for ngs plot but I am not sure how to get it to show up as an option on my local instance of galaxy? Thanks Mary
admin install local ngs plot • 353 views
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modified 9 months ago by Jennifer Hillman Jackson ♦ 25k • written 9 months ago by rossillom • 0

Hi - Are you using tools from the DeepTools group? Which one? Or if a different plotting tool, which? The full tool name with the version included would help. This name/version is at the top of the tool form.

Thanks!

ADD REPLY • link written 9 months ago by Jennifer Hillman Jackson ♦ 25k

It's separate from DeepTools, it's called ngs plot, version 1. It's only available on galaxy local not the main server.

ADD REPLY • link written 9 months ago by rossillom • 0
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gravatar for Jennifer Hillman Jackson
9 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Thanks, I found the tool: https://toolshed.g2.bx.psu.edu/view/kosrou/ngs_plot/b848d0eb3841

It is an older tool submitted by a community contributor. I haven't used/configured it myself. This is the author's only tool, it doesn't have a readme or install instructions, and there are no associated tool tests or a linked development repository.

If you still want to try to use this tool, contact the tool author for installation/config help through the Tool Shed (login or create an account > navigate to the tool (or use the link above) > Pick "contact author" from the Repository Actions menu.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 9 months ago by Jennifer Hillman Jackson ♦ 25k
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