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• Fastqc And Blast?
  Hello mates, I have two doubts galaxy: a) I have rna-seq data from Illumina and do fastqc ... t...
• Trimmomatic data on Fastqc
  Hell, i am unable to load "Trimmomatic on Fastq groomer on data file"on Fastqc. it show Fatal err...
• inquiry about the reference genome
  When i wanted to analyse the result of the WGS for a c.elegans mutant ,i found that i do not know...
• CloudMap Select Variants tool NEVER works
  I've tried multiple times to analyze my WGS data using the CloudMap: Hawaiian Variant Mapping wor...
• Checking coverage of yeast whole genome sequencing data
  I have WGS data (2x150b paired end NextSeq reads) for Yeast (sacCer3) and would like to know how ...
• illumina PE quality control - NGS: QC & Manipulation
  Hi, I have a PE illumina miseq data set (separate forward-R1 & reverse-R2) of a WGS of a par...
• FastQC job just keeps running without any output
  I just installed the latest Galaxy version 18.01 of Galaxy on a virtual machine running Ubuntu. F...
• How get Cancer WGS for analysis in Galaxy
  Hi,   I want to do some analysis on Whole Cancer Genome data. 1) Can I get the sequence form s...
• parameters and library type for tophat
  hi i haev SRA ids on which i am working. i plan to generate a reference based assembly. 1. i ha...
• MSA and phylogenetic tree for WGS data of mammalian species
  Hiii.... i want to do multiple sequence alignment to get format compatible for constructing a phy...
• time for FastQC
  I have included my raw data in FastQ format, it is about 1001.3MB. I am wondering to know the exp...
• FASTAQ not able to be selected in BWA, though FastaQC passed
  I need some help. I am trying to map two fastq datasets with Bwa-mem. If I design a workflow by...
• Inquiry On Fastqc Report
  Dear Galaxy Officer, Good day. I am a new user of Galaxy main server. The tools provided are ve...
• FASTQC for RNA-Seq data in Galaxy
  Hello, I have 3 paired end fastaq file and when i loaded to Galaxy through EBI-SRA, it shows XX...
• How to add a genome indexed at https://usegalaxy.org to IGB (when it is not already natively included)
  Hello, I have been using Galaxy Main to map WGS data from E. coli. I have tried several mapping ...
• fastqc on fastq.gz files in galaxy?
  What do I need to convert a fastq.gz file (from ENA) to so galaxy fastqc will accept it? thanks r
• A server for conservation genomics
  We are currently trying to design a server/cluster for a public conservation genomics galaxy serv...
• failure preparing job - workflow
  Hi,  I managed to setup my own server (running on Ubuntu) and managed to perform the necessary a...
• inquiry about the reference genome and SNPs
  Dear Sir/Madam: How do you do?I am a new user of Galaxy.And i have been exploring how to ana...