Question: fastQC results of WGS data
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gravatar for 15324456297
6 months ago by
153244562970 wrote:

Hello everyone. I got a few fastQC results of WGS data recently,all results have the common problems.Kmer Content and Overrepresented sequences show warning or failure.If I want to do GATK analysis next, what should I do to filter these data?

ADD COMMENTlink modified 6 months ago by Jennifer Hillman Jackson25k • written 6 months ago by 153244562970
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gravatar for Jennifer Hillman Jackson
6 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The GATK tools in Galaxy have been deprecated. Alternative/updated methods for Variant discovery are in our tutorials, as well as how to interpret/act on FastQC results.

Please see:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 6 months ago by Jennifer Hillman Jackson25k
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