Question: I have a VCF.gz and 26 BAM files... no idea how to use them. please help
gravatar for mccarthyti
13 months ago by
mccarthyti0 wrote:

I have seen the reports provided that reference clinvar/ncbi databases. I'm trying to get a closer look at chromosome 7 and the CTFR gene. is it possible to see if 2 different variants are part of the same chromosome? together as a complex allele? or whether they are variants each on their own chromosome? all the data is public.

snp bam • 602 views
ADD COMMENTlink modified 13 months ago by Jennifer Hillman Jackson25k • written 13 months ago by mccarthyti0
gravatar for Jennifer Hillman Jackson
13 months ago by
United States
Jennifer Hillman Jackson25k wrote:


This public Galaxy instance hosts specific tools and tutorials that cover what I think you are trying to do:

Other public servers can be reviewed here, many are also domain specific:

For basic variation analysis, Galaxy tutorials can be found here:

And this may be where are you are starting from, but just in case, if the goal is to submit your results to ClinVar, check out their website and linked resources:

Hope that helps! Jen, Galaxy team

ADD COMMENTlink written 13 months ago by Jennifer Hillman Jackson25k
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