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• Are there Structural Variant Analysis Software in Galaxy?
  Hello Galaxy, Do you know which software available on Galaxy is capable of performing structural...
• Trio analysis capabilities
  Does Galaxy have capabilities to do Variant Call among TRIOS (parent/child) or any other TRIO ana...
• getting number of SNPs, insertion/deletion from VCF with VCFfilter
  Hello, I am trying to extract from a VCF file the number of SNPs: Single nucleotide variants , I...
• Annovar is returning a file with only headers
  Hi I am trying to do some variant analysis. I have mapped the reads using hg19 as reference thr...
• 1000 Genome Variant Calls
  Repost Hello Jennifer, I am a new to Linux and have no programming skills and hence galaxy is t...
• Chip-Seq, Encode Peaks And Galaxy
  Hi everyone, I have a list of genomic regions with some variants and would like to study the cor...
• SNP analysis using Galaxy
  Hello everyone, I am new to Galaxy. Is there any basic tutorial for doing SNP analysis using Galaxy?
• Mpileup is not working
  Hi I use Galaxy online on daily basis for analysis of my data. I got problem with Mpileup tool, ...
• Does Galaxy NGS tools support targeted sequencing analysis?
  Glad to see Galaxy now provides support to do EXOME-seq analysis from FASTQ to Variant calling. K...
• Converting a CLC variant pipeline to Galaxy
  Hello, I have a recieved a VCF file wich was generated by CLC. Currently, I try convert the below...
• Help NGS data analysis
  Dear all, I am working on the NGS data by using some galaxy tools and I do not know many things ...
• error in running MiModD Variant Calling
  I am a new user of MiModD (Previously, I use CloudMap to analysis WGS data from Hawaiian Variant ...
• GATK Select Variants Reference Genome
  Hi, I'm trying to use GATK Tools Select Variants on VCF files of whole genome sequencing data, ...
• variants intersect with dbSNP
  Hello, I have a VCF file and I would like only keep variants which are in dbsnp_135.hg19.vcf. H...