I am trying to answer some very broad questions with some chromosomal genomic data. So far, I have created a table based on chromosome 12 of hg38 which includes percent coverage of exons by common SNPs, percent coverage of exons by flagged SNPs, and percent coverage of exons with OMIM allele variants. What I need to know is: Is there a tool I can use that will tell me if there is a common biological function of genes that have a high percentage of SNPs? And how do I get this information based on Gene Ontology terms?
Part two of my question would be is there a tool which I can use to run multiple hypothesis testing? If so where is it and how does it work?
Thank you for any help!