Question: variants intersect with dbSNP
0
gravatar for Mic
3.2 years ago by
Mic70
Australia
Mic70 wrote:

Hello,

I have a VCF file and I would like only keep variants which are in dbsnp_135.hg19.vcf. How is it possible to do it in Galaxy?

Thank you in advance

mic

dbsnp variants galaxy • 1.1k views
ADD COMMENTlink modified 3.1 years ago by Bjoern Gruening5.1k • written 3.2 years ago by Mic70
3
gravatar for Bjoern Gruening
3.1 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Hi,

for example can use "VCF-VCFintersect: Intersect two VCF datasets", or BEDtools to intersect both files.

Ciao,

Bjoern

ADD COMMENTlink written 3.1 years ago by Bjoern Gruening5.1k
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