I am running a local instance of galaxy and in an attempt to reinstall a newer version of MACS2 I have run into a dependency issue. The error comes in installing numpy 1.9 returning this message:
Traceback (most recent call last): File "setup.py", line 264, in <module> setup_package() File "setup.py", line 210, in setup_package raise RuntimeError("Writing custom site.cfg failed! %s" % ex) RuntimeError: Writing custom site.cfg failed! 'ATLAS_LIB_DIR'
Any help would be greatly appreciated, cheers!