Not able to re-start Galaxy

Question: Not able to re-start Galaxy

13 months ago by

Dear all,

At the moment I'm trying to set-up an in-house Galaxy server. The tutorial on Galaxy is quite clear on this, and I managed to do so by installing a Virtual machine with Libunto, and then running the following code: $ sudo apt-get install git-all $ git clone -b release_17.05 https://github.com/galaxyproject/galaxy.git cd /home/virtual/galaxy $ sh run.sh After that, I changed galaxy.ini.sample with host to host=0.0.0.0 and could open Galaxy on http://localhost:8080.

However, after some time, the 8080 did not show Galaxy anymore. I tried to get it back with $ sh run.sh -reload, but without success. Does anyone know what could be going wrong, or direct me to a similar post?

Kind regards,

galaxy • 528 views

ADD COMMENT • link •

modified 13 months ago • written 13 months ago by twan.kranenburg • 0

13 months ago by

Martin Čech ♦♦ 4.9k

United States

Martin Čech ♦♦ 4.9k wrote:

I tried to get it back with $ sh run.sh -reload, but without success

I am afraid this script does not have -reload capabilities. They way it is used in simple deployments is, that you interrupt the terminal where run.sh runs (with ctrl+c) and then start it again. There are other options like using supervisor that can be used to make this more robust.

Let me know if you want more details on that.

ADD COMMENT • link modified 13 months ago • written 13 months ago by Martin Čech ♦♦ 4.9k

13 months ago by

twan.kranenburg • 0

twan.kranenburg • 0 wrote:

Dear Martin Cech,

Thank you for your answer. The Supervisor tool looks quite interesting. Can you give me advice on how to reboot Galaxy with or without the Supervisor tool?

Kind regards,

ADD COMMENT • link written 13 months ago by twan.kranenburg • 0

Hi - This is how to shut down the current process so you can restart it: https://galaxyproject.org/admin/get-galaxy/#shutting-down-galaxy.

Thanks, Jen, Galaxy team

ADD REPLY • link written 13 months ago by Jennifer Hillman Jackson ♦ 25k

13 months ago by

twan.kranenburg • 0

twan.kranenburg • 0 wrote:

Thank you both for your answers.

Stopping Galaxy with Crtl+C worked (I think). However, when I want to restart it I get the following error: ConfigParser.NoSectionError: No Section: 'app:main''. Did any of you encountered this error before?

ADD COMMENT • link written 13 months ago by twan.kranenburg • 0

This most probably means the configuration file of the Galaxy is corrupted. Check for the file config/galaxy.ini It should look similar in formatting to config/galaxy.ini.sample. Try renaming the current galaxy.ini and creating new one from galaxy.ini.sample.

ADD REPLY • link modified 13 months ago • written 13 months ago by Martin Čech ♦♦ 4.9k

Please log in to add an answer.

Similar posts • Search »