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Question: extract data set from collection
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gravatar for m.bernt
14 months ago by
m.bernt • 40
m.bernt • 40 wrote:

Just a potentially stupid question: Is it possible to extract a (or all) data set(s) from a collection?

Thanks, Matthias
operations manipulate collections galaxy • 751 views
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modified 14 months ago • written 14 months ago by m.bernt • 40
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gravatar for m.bernt
14 months ago by
m.bernt • 40
m.bernt • 40 wrote:

Thanks for the answer. These tools seem not to do what I want to do. All of them have collection as in and output. I would like to input a collection and get the separate data sets back, essentially the inverse operation of building a collection. I.e. building the collection is: dataset1, dataset2,... -> collection

I want to have the other direction.
ADD COMMENT • link written 14 months ago by m.bernt • 40
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gravatar for Jennifer Hillman Jackson
14 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Please see the tools in the tool group Collection Operations at https://usegalaxy.org for the currently available operations to unzip and manipulate existing collections.

More discussion about collection manipulation/dataset extraction is here (future goals): https://github.com/galaxyproject/galaxy/issues/740

Reference tutorial for creating/using collections (does not include the new manipulation operations - yet!): https://galaxyproject.org/tutorials/collections/#using-collections

Thanks! Jen, Galaxy team
ADD COMMENT • link modified 14 months ago • written 14 months ago by Jennifer Hillman Jackson ♦ 25k
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