Question: Trying to get URL from Tophat output for IGV
gravatar for Brenna
3.5 years ago by
United States
Brenna0 wrote:



I am trying to visualize multiple sample's tophat outputs in IGV. 

I would like to be able to upload the files using the URL option in IGV, but I am not sure how to get the tophat run data in a URL form. Do I need to do a file conversion or is there any easier way? 




tophat igv url • 846 views
ADD COMMENTlink modified 3.5 years ago by Jennifer Hillman Jackson25k • written 3.5 years ago by Brenna0
gravatar for Jennifer Hillman Jackson
3.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Do you mean that you want the URL for the BAM dataset? Left-click on the disk icon within any dataset to capture the link. If you get stuck, I can point you to more details.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3.5 years ago by Jennifer Hillman Jackson25k

When I tried to add the URL that way into the add track option of IGV it would not work correctly. Instead it added a column at the top with a lot of nonsense symbols.

ADD REPLYlink written 3.5 years ago by Brenna0
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