Question: Upload of fastq files in the workflow
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andrea.annibal • 20 wrote:
Dear All, I successfully upload couple of files (fastq) using cyberduck in the server usegalaxy.org in my account. Additionally after 10-15 min i could see that they were present in the history as well (they become green). Since couple of days I cannot select those files during the set up of my workflow. They don`t show up in the "Input databset" section. I already log out/in, open new history, re-upload the files and refresh the page multiple times but nothing happened. Could you please help me and indicate me the a possible solution for my problem?
Many thanks
A.
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modified 2.2 years ago
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Jennifer Hillman Jackson ♦ 25k
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2.2 years ago by
andrea.annibal • 20
What's the file type associated with them in your history and what tool are you trying to use them with?
In my history all files are in fastq format. They are a merge between forward and reverse sequence data of c. elegans mutants. I want to use a workflow to generate a list of possible mutation candidate. As I wrote, the files are correctly uploaded in the right format in my history but they are not appearing in the selection windows of input dataset of my workflow. Hope that I clarify my problem.
Odd, is this happening on the main usegalaxy.org server or a different one? If it's the former, perhaps one of the admins can impersonate you and have a look at why that's not working.