Question: galGal5 reference genome and indexes
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gravatar for caroline.brossas
3 months ago by
caroline.brossas0 wrote:

Hi I'm interested in the new Galgal 5 assembly obtained in dec2015, for the moment it is only possible to align reads against the Galgal4 assembly in Galaxy. Do you know when this new assembly (Galgal 5) will be available? Thanks a lot Caroline

ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson23k • written 3 months ago by caroline.brossas0
0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

I added the genome to the tracking list of databases to index. The lists are not complete - all of UCSC's genomes plus the NCBI/plant requests will be added during processing.

For now, obtain the genome from UCSC, load it to Galaxy, and use it as a custom reference genome.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson23k
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