Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Join tool failing for exceeding memory resources
0
gravatar for f.maggiolini90
18 months ago by
f.maggiolini90 • 0
f.maggiolini90 • 0 wrote:

Hi, I would know why I have at the moment problem with the join function of Galaxy. Last week I used it but now I can't have an output, the process run but it can't reaches the end. Thanks.
error tool memory join galaxy • 401 views
ADD COMMENT • link •
modified 18 months ago by Jennifer Hillman Jackson ♦ 25k • written 18 months ago by f.maggiolini90 • 0
1
gravatar for Jennifer Hillman Jackson
18 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

If the job is failing for exceeding memory (this message), with this particular tool the failure can sometimes be resolved by swapping the order of the inputs on the tool form. Be aware that this changes the merge logic applied to the data.

There are a few different tools that can be used to merge/join data within Galaxy. Do a tool search on the keyword "join" to see the different options and/or review tools in upper tool groups at http://usegalaxy.org that manipulate/parse data to locate the alternatives.

Some inputs are so large that they will always fail. Breaking the data up and running in batch, then concatenating the results, is sometimes an option. Other times moving to a local or cloud Galaxy with resources that you control is a solution.

Hopefully, this helps! If you are working at http://usegalaxy.org, or can reproduce the problem there, and would like help determining if the error is due to format problems versus data that is truly too large to process, a bug report can be sent in for feedback.

Thanks! Jen, Galaxy team
ADD COMMENT • link modified 18 months ago • written 18 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 176 users visited in the last hour