Question: Join On Genomic Interval
0
Seth Kasowitz • 10 wrote:
Hello,
I am hoping for some clarification on how Join on Genomic Intervals
functions. I have two lists of intervals: mapped reads and a list of
exons.
If I join the two (INNER JOIN), I expect multiple reads to join with
the
same exon, and see this in the output. What is confusing me is that
some
output has more joined intervals returned than were present in the
input
reads.
For example: I join 17,000,000 mapped reads with a list of 300,000
exons and
retrieve 21,000,000 joined intervals
I must be misunderstanding what the function does, and am hoping
someone can
explain how the output can have more lines than the reads submitted.
Thank you,
Seth
--
Seth Kasowitz
University of Connecticut
Department of Molecular and Cellular Biology
seth.kasowitz@uconn.edu
Beach Hall Room 335 (6-3580)
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modified 7.3 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
7.3 years ago by
Seth Kasowitz • 10
