I found your account at http://usegalaxy.org, so there is no need to send in a bug report. Some Tophat jobs are successful, some failed for cluster problems earlier in the week, but the most recent jobs are now failing for this reason:
This job was terminated because it ran longer than the maximum allowed job run time. Please click the bug icon to report this problem if you need help.
This error indicates that the job runs longer than the allocated wall-time on the Galaxy Main http://usegalaxy.org server using default cluster resources. You can try running on a targetted cluster with a longer processing time (tool form option: Job Resource Parameters). Try Stampede and/or Jetstream. Full details about this and other options (including moving to a local/cloud Galaxy, if needed) are here: https://wiki.galaxyproject.org/Support#Job_failure_reason:_execution_exceeds_maximum_allowed_job_run_time_.28walltime.29
Thanks, Jen, Galaxy team