Question: Files queued in cufflinks for 4-5 days
gravatar for fchris
18 months ago by
fchris0 wrote:


I am quite novice but have loved using Galaxy for RNAseq - Ive had sample queued for cufflinks for several days (guessing around 4-5) that are not processing. From reading posts I can tell that I should not re-submit as they will go to end of line, but wanted to check to see if there are known issues w servers or cufflinks, or if anyone had suggestions for how to troubleshoot.

thanks a lot! Chris

rna-seq • 347 views
ADD COMMENTlink modified 18 months ago by Jennifer Hillman Jackson25k • written 18 months ago by fchris0
gravatar for Jennifer Hillman Jackson
18 months ago by
United States
Jennifer Hillman Jackson25k wrote:


There have been recent cluster issues. Please see this post for how to proceed for now:

For your case, I would rerun if the jobs have not started up by now. This is a non-standard solution only to be used for this time window.

Thanks and our apologies for the current issues, Jen, Galaxy team

ADD COMMENTlink written 18 months ago by Jennifer Hillman Jackson25k
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