Question: Galaxy Cloud @ AWS: how to use tophat2 multi-threaded?
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cristina.vieira • 0 wrote:
I'm trying to run tophat2 job on my cluster, having allocated 32 core worker node expecting some parallelisation. When I connect to the node and issue "top" I see "bowie-2-align-s" process running for 30min on a single core/thread.
What do I have to do to make the job run multi-threaded ?
This is the command sent by galaxy to run the task: "tophat2 --num-threads ${GALAXY_SLOTS:-4} --read-mismatches 2 ..."
Thx
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modified 2.6 years ago
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Enis Afgan • 690
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written
2.6 years ago by
cristina.vieira • 0
