Question: Hmm Tool In Galaxy??
0
gravatar for Surya Saha
7.7 years ago by
Surya Saha80
Surya Saha80 wrote:
Hi, Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a HMM on a DNA or protein sequence? I was not able to find any. Thanks -Surya
galaxy • 774 views
ADD COMMENTlink modified 7.7 years ago by Jeremy Goecks2.2k • written 7.7 years ago by Surya Saha80
0
gravatar for Jeremy Goecks
7.7 years ago by
Jeremy Goecks2.2k
Jeremy Goecks2.2k wrote:
Surya, HMMer is not available on our public server, nor is there anything similar. However, there is a wrapper for hmmscan in the Galaxy Tool Shed: http://community.g2.bx.psu.edu/ that you can use if download and install on a local Galaxy instance. I expect we'll add HMM support in the future, but it's not a priority right now. Best, J.
ADD COMMENTlink written 7.7 years ago by Jeremy Goecks2.2k
Thank you for the prompt reply. Will look forward to it. Best, Surya
ADD REPLYlink written 7.7 years ago by Surya Saha80
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