Question: Is There Any Tool In Galaxy For Trimming The Barcode In 454 Sequencing Data? Thanks.
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gravatar for Yang Liu
7.8 years ago by
Yang Liu10
Yang Liu10 wrote:
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ADD COMMENTlink modified 7.8 years ago by Peter Cock1.4k • written 7.8 years ago by Yang Liu10
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gravatar for Peter Cock
7.8 years ago by
Peter Cock1.4k
European Union
Peter Cock1.4k wrote:
Hi, The Roche off instrument applications cover this (working directly with the SFF files). Try asking Edward Kkirton if he would update his "Suite of Newbler tools" wrappers in the Community Tool Shed to handle barcode trimming (and dividing SFF files by barcode). See http://community.g2.bx.psu.edu/ Alternatively, and maybe not quite what you need, I'm working on barcode/primer/adapter trimming for FASTA, FASTQ and SFF files - see this thread earlier this month on the Galaxy dev mailing list: http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-February/004344.html Peter
ADD COMMENTlink written 7.8 years ago by Peter Cock1.4k
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