Sequence Logo

8.7 years ago by

Penn State

Erick: Not at the moment. Do you have any in mind? a. Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org

ADD COMMENT • link written 8.7 years ago by Anton Nekrutenko ♦ 1.7k

We know people like weblogo: http://weblogo.berkeley.edu/ And I recently started using Icelogo: http://iomics.ugent.be/icelogoserver/main.html But there are others out there, I know. Mary [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of Anton Nekrutenko To: Erick Antezana Cc: galaxy-user@bx.psu.edu Subject: Re: [galaxy-user] Sequence logo Erick: Not at the moment. Do you have any in mind? a. Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

ADD REPLY • link written 8.7 years ago by Mary Mangan • 40

I can recommend iceLogo too. Kind of sequence logos on steroids :). It's a pretty young project and I found some graphical glitches in the interface, but the developers respond very quickly :). They also offer iceLogo as a web service that you can call remotely... Cheers, Pi mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype: pieter.online

ADD REPLY • link written 8.7 years ago by Pieter Neerincx • 360

Hi, iceLogo looks indeed very promising; however, in terms of integration to Galaxy, WebLogo (http://code.google.com/p/weblogo/) seems to be much more straightforward? cheers, Erick

ADD REPLY • link written 8.7 years ago by Erick Antezana • 570

Hi, Just out of interest, is there a repository/Wiki page where all the XML conf files for apps can be submitted? A Weblogo interface is a good example of something that would benefit lots of people. I am sure there will be lots of others instances of third party apps developed outside the main Galaxy team in future (especially as Galaxy takes off!). Steve

ADD REPLY • link written 8.7 years ago by Steve Taylor • 240

Hi Steve, J. Taylor (Galaxy team) created this wiki location to house such type of efforts: http://bitbucket.org/galaxy/galaxy-central/wiki/ThirdPartyTools cheers, Erick

ADD REPLY • link written 8.7 years ago by Erick Antezana • 570

Hi Anton, I was wondering whether you guys discussed further about integrating a logo tool into Galaxy? cheers, Erick

ADD REPLY • link written 8.6 years ago by Erick Antezana • 570

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