Question: Ion Torrent data analysis using galaxy
0
gravatar for vinay.d
20 months ago by
vinay.d0
vinay.d0 wrote:

Hi,

I am currently working on Ion Torrent PGM to generate sequence data. I know Ion torrent system generates FASTQ and SFF files. Can i use the FASTQ files directly for analysis in GALAXY. I wanted to know if Ion Torrent data can be analysed using galaxy.

snp • 970 views
ADD COMMENTlink modified 20 months ago • written 20 months ago by vinay.d0
0
gravatar for Jennifer Hillman Jackson
20 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Yes, this fastq sequence data can be used with Galaxy-wrapped tools.

Please see the Galaxy hub here for basic protocols for loading and manipulating fastq data: https://new.galaxyproject.org/tutorials/ngs/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 20 months ago by Jennifer Hillman Jackson25k
0
gravatar for vinay.d
20 months ago by
vinay.d0
vinay.d0 wrote:

Thanks Jen for your suppport

ADD COMMENTlink written 20 months ago by vinay.d0
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