Question: Warning Message
0
Rolando Mantilla • 10 wrote:
I'm having issues with the FASTQ_Groomer. What I have done it first
I downloaded an SRA file created by an Ion torrent sequencer from the
NCBI
site. Then used the fastq-dump app from the NCBI site to covert the
.sra
file to .fastq file. When I uploaded the data into galaxy it
recognized it
as a fastq(as it should) but when I try to run the FASTQ groomer I get
the
message and warnings below. I also have already downloaded the the
blast_datatypes tool from the tool_shed. I truly don't know what the
issue
is, any help
An error occurred running this job: *Groomed 12376 sanger reads into
sanger reads.
*WARNING:galaxy.datatypes.registry:Error loading datatype with
extension 'blastxml': 'module' object has no attribute 'BlastXml'
WARNING:galaxy.datatypes.registry:Overriding conflicting
datatype with extension 'blastxml', using datatype from
/mnt/galaxyData/tmp/tmpdP_cZ7.
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modified 6.0 years ago
by
Daniel Blankenberg ♦♦ 1.7k
•
written
6.0 years ago by
Rolando Mantilla • 10
