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Question: Picard:command not found
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gravatar for preetipankajakshanpillai
21 months ago by
preetipankajakshanpillai • 0
preetipankajakshanpillai • 0 wrote:

I am working with Galaxy local instance on CentOS. I have installed Picard (owner devteam and revision 6741a8ace658) from ToolShed. It has installed properly but I am not able to use the tools. While running its throwing error "Fatal error: Exit code 127 () /home/preeti/Galaxy/galaxy-dist/database/job_working_directory/000/102/tool_script.sh: line 9: picard: command not found". I am not able to solve the issue. Please, help if anyone knows regarding this issue.

Thank you.
software error galaxy picard • 736 views
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modified 21 months ago by Jennifer Hillman Jackson ♦ 25k • written 21 months ago by preetipankajakshanpillai • 0
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gravatar for Jennifer Hillman Jackson
21 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

What release of Galaxy are you using?

17.01 will handle Conda dependencies without changes. Conda dependency resolution can be used at the time of tool install.

The few prior release required that conda be installed on the system and dependencies resolution was set up to use conda for dependency management in the galaxy.ini file, then conda could be selected to help resolve dependencies at the time of tool installation.

Try upgrading to 17.01, then reinstalling Picard, checking the conda dependencies resolution option. This tool installs correctly on a simple, default 17.01 (http://getgalaxy.org - single user).

Dependency resolution details and Conda help: https://docs.galaxyproject.org/en/master/admin/index.html

Let us know how this goes, Jen, Galaxy team
ADD COMMENT • link written 21 months ago by Jennifer Hillman Jackson ♦ 25k
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