Greetings Galaxy experts and enthusiasts,
I have a simple single node installation of Galaxy using Ubuntu 16.04.1 and python 2.7.12
I Want to perform a simple join operation (per the 101 tutorial) but cannot fully install the dependencies required: package_galaxy_ops_1_0_0 -> galaxy-ops
This is due to a SSL issue because the external location for this package is behind an https and NOT http:
"Error downloading from URL http://depot.galaxyproject.org/package/source/gops-1.0-st.tgz urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:590)"
I was able to download the package, gops-1.0-st.tgz with an external browser and tried to install it in the specified directory, to no avail:
./database/dependencies/galaxy-ops/1.0.0/devteam/package_galaxy_ops_1_0_0/eef263ff9b95
So, I am asking the community here how to proceed with:
- Installing the package without the SSL issue. Where can I modify the python code to skip the ssl validation? or,
- How can I manually install this package and have Galaxy accept it?
Thanks for any guidance here.
I am following-up on my inquiry above. Also, where can I find all of the process and/or error messages that are associated with trying to install tools? That is, where can I find the file location where following errors are stored that are present from the GUI:
File "/home/galaxy/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 121, in install_and_build_package_via_fabric tool_dependency = self.install_and_build_package( install_environment, tool_dependency, actions_dict ) File "/home/galaxy/galaxy/lib/tool_shed/galaxy_install/install_manager.py", line 79, in install_and_build_package initial_download=True ) File "/home/galaxy/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 31, in execute_step initial_download=initial_download ) File "/home/galaxy/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 665, in execute_step dir = self.url_download( work_dir, downloaded_filename, url, extract=True, checksums=checksums ) File "/home/galaxy/galaxy/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 165, in url_download raise Exception( err_msg )
Error downloading from URL http://depot.galaxyproject.org/package/source/gops-1.0-st.tgz : <urlopen error="" [ssl:="" certificate_verify_failed]="" certificate="" verify="" failed="" (_ssl.c:590)><="" p="">