I was asked to set up a local instance of Galaxy which should use same software versions as Galaxy Main.
However, picard tool 1.126.0 does not have R as a dependence in toolshed. Later version 1.136.0 does and R 3.1.2 is installed as part of picard tool.
When running CollectInsertSizeMetrics under 1.126.0 local jobs fail with:
"Caused by: java.io.IOException: Cannot run program "Rscript": error=2, No such file or directory"
Same job runs fine if I switch to 1.136.0.
Could you please give me instructions how to help picard 1.126.0 find R executable?