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Question: How to Obtain Reads After Using CutAdapt Tool
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gravatar for jmgray2
8 weeks ago by
jmgray2 • 0
jmgray2 • 0 wrote:

Hello!

I am trying to analyze the sample reads after using the cutadapt tool, but cannot find them. Please help.
fastq fastqsanger.gz rna-seq fastqsanger • 104 views
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modified 8 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 8 weeks ago by jmgray2 • 0
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gravatar for Jennifer Hillman Jackson
8 weeks ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The results from the tool are in your history as a dataset. Sometimes after running a tool you need to "refresh" the history panel using the double-circle icon at the top. Maybe that was the problem?

I see at least Cutadapt result dataset in your most current history. It has a correct fastq datatype (fastqsanger.gz) that is recognized by most tools as valid fastq input.

A few tools won't work with gz compressed data inputs - but most if not all of those are older/deprecated and should be avoided.

Which tool is ignoring these results as valid input?

FAQs: https://galaxyproject.org/support/#troubleshooting

Thanks and please share more details about what is going wrong if the above does not help enough. Jen, Galaxy team
ADD COMMENT • link modified 8 weeks ago • written 8 weeks ago by Jennifer Hillman Jackson ♦ 25k
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