Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Citing Picrust & KEGG database
1
gravatar for zoya.grigoryan
22 months ago by
zoya.grigoryan • 10
zoya.grigoryan • 10 wrote:

Hello! Can anyone point me in the right direction? I am trying to cite my picrust data, and would like to specify which KEGG database was referenced. It seems to be updated frequently. Thank you in advance!
kegg picrust • 544 views
ADD COMMENT • link •
modified 22 months ago by Jennifer Hillman Jackson ♦ 25k • written 22 months ago by zoya.grigoryan • 10
1
gravatar for Jennifer Hillman Jackson
22 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

If you are using Picrust within Galaxy with the pre-computed reference COG files, this is the source most use (from the Tool Shed's web page for the tool - drill down into "Valid Tools" to view in full):

Reference Data

Precalculated files: ftp://ftp.microbio.me/pub/picrust-references/picrust-1.0.0/

Some other useful info is in this Q&A post at the tool's google group: https://groups.google.com/forum/#!topic/picrust-users/bJMbEFD2OUU

To be absolutely certain about the KEGG version in use at any particular public server, contact the administrators and they can clarify.

Hope this helps! Jen, Galaxy team
ADD COMMENT • link written 22 months ago by Jennifer Hillman Jackson ♦ 25k

Thank you. This seems to indicate the version of PICRUSt, but not which update of the KEGG database. May have to contact admins.

ADD REPLY • link written 22 months ago by zoya.grigoryan • 10
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour