Question: Error On Indel Analysis
0
Evan Schwab • 60 wrote:
Hi,
I am receiving the following error when I try to run the Indel
Analysis tool
on a sam file. I kept the Frequency threshold at the default 0.015.
Traceback (most recent call last):
File
"/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py",
line 227, in
if __name__=="__main__": __main__()
File
"/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py",
line 84, in __main__
add_to_mis_matches( mis_matches[ chrom ], pos, bases )
File
"/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py",
line 34, in add_to_mis_matches
mis_matches[ pos + j ] = { base: 1 }
MemoryError
Prior to that I tried with Frequency threshold 0.0 and it ran for days
on
end without any results. And I've tried Frequency threshold of 0.10
and it
gave and error that said "Killed" with no explaination.
Is there an error with the tool?
Thanks
Evan
--
Evan Schwab
Research Associate
Megason Lab
Department of Systems Biology
Harvard Medical School
200 Longwood Ave
Boston, MA 02115
908-938-3779
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modified 7.7 years ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
7.7 years ago by
Evan Schwab • 60
