Question: Concatenate Fasta Tool Problem
0
Paul McAdam • 10 wrote:
Hi,
I'm trying to use the concatenate fasta tool at
http://main.g2.bx.psu.edu/root?tool_id=fasta_concatenate0 to
concatenate an xmfa file output from mauve (headers formatted to
following standard: >1:517-24215(+)|0402981.fa
but am receiving the following error.
Traceback (most recent call last):
File "/galaxy/home/g2main/galaxy_main/tools/fasta_tools/fasta_concat
enate_by_species.py",
line 40, in
if __name__ == "__main__" : __main__()
File "/galaxy/home/g2main/galaxy_main/tools/fasta_tools/fasta_concat
enate_by_species.py",
line 23, in __main__
species[component.species] = tempfile.TemporaryFile()
File "/usr/lib/python2.6/tempfile.py", line 475, in TemporaryFile
(fd, name) = _mkstemp_inner(dir, prefix, suffix, flags)
File "/usr/lib/python2.6/tempfile.py", line 228, in _mkstemp_inner
fd = _os.open(file, flags, 0600)
OSError: [Errno 24] Too many open files: '/space/g2main/tmpotY_hX'
Does anyone have any ideas what the issue may be?
Regards
Paul
--
Laboratory for Bacterial Evolution and Pathogenesis
Centre for Infectious Diseases and The Roslin Institute
University of Edinburgh Easter Bush Campus
Midlothian
EH25 9RG
Tel: +44 (0)131 6519231
email: p.mcadam@sms.ed.ac.uk
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modified 7.5 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
7.5 years ago by
Paul McAdam • 10
