Question: Tophat for illumina tool
0
gravatar for francisfoguim
4 weeks ago by
francisfoguim0 wrote:

Hello everyone! I am trying to practice analyzing data (RNA-Seq data analysis), but from the tools panel of my Galaxy interface, I can't find the tophat for illumina tool and neigther NGS-RNA-Seq. So I was not able to continue the analysis forward. Could anyone please help me with that?

Thanks

rna-seq tophat • 61 views
ADD COMMENTlink modified 4 weeks ago • written 4 weeks ago by francisfoguim0
1
gravatar for Devon Ryan
4 weeks ago by
Devon Ryan1.2k
Germany
Devon Ryan1.2k wrote:

N.B., I wouldn't recommend starting anything with tophat, use hisat instead if it's available. Tophat has been replaced by tophat and should be considered "legacy software" that's only to be used for consistency with an earlier analysis.

Anyway, I see tophat on usegalaxy.org, so if you're using a different instance then ask the administrator to install hisat (again, don't start using tophat).

ADD COMMENTlink written 4 weeks ago by Devon Ryan1.2k
0
gravatar for francisfoguim
4 weeks ago by
francisfoguim0 wrote:

Thanks for your help.

ADD COMMENTlink written 4 weeks ago by francisfoguim0
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