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• Toolshed INstalled tool : Job submission Failed after upgrading galaxy local instance
  Hi galaxy community I have been updated my local instance of galaxy to release 17.05. Since this...
• 'Draw Quality Score Boxplot' Error
  Hi, I have illumina ChipSeq data and I want to use the "Draw quality score Boxplot" I run the"qua...
• Cuffdiff crashed if I try to use option "Generate SQLite"
  I am running Cuffdiff on my data, It runs fine, but if I am adding option "Generate SQLite" it c...
• Remote job server indicated a problem running or monitoring this job.
  While doing cufflinks for my RNASeq data following error is coming, "Remote job server indicated ...
• Is Trinity currently working?
  I'm trying to run Trinity but keep receiving the following error message: "Remote job server indi...
• Get Data problem
  Hello, since yesterday, there is a problem on Galaxy. when I want to load my data or form UCSC. ...
• Mpileup is not working
  Hi I use Galaxy online on daily basis for analysis of my data. I got problem with Mpileup tool, ...
• No "local" option to view BAM files with IGV
  Hi I have BAM files loaded onto the main Galaxy server (usegalaxy.org) and I want to visualize t...
• Input Contain Special Characters
  Hi, I was implementing a galaxy tool. A problem occurs when my input contains ">", linebreak,...
• Current history is unreachable
  Dear Galaxy Administrator: I am having trouble to access my current history in Galaxy. The syste...
• Bioblend error for conditional input
  Using the python bioblend package to send my job into Galaxy, I have an error when I try to send ...
• Cannot upload data from the local file
  Hello, I got strucked to upload my RNAseq data(fastq format, 873Mb) by using menu "upload file fr...
• REST API - can't find workflow step_id in a workflow invocation
  Hi, i am using the REST API for workflows, as documented here: https://galaxy.readthedocs.org/e...
• Problem with installing galaxy data into my git bash!
  Hi, I have some problem intstalling galaxy data into my git bash. My version is version 2.7.0...
• Encoding problem with return value from tool's custom dynamic_options function
  Dear Biostars community, I am having problems developing a python function to return some custom...
• TopHat error message
  Hi, I've been trying to run TopHat on my RNAseq data. I ran my data through FastQC and then Trim...
• Cufflinks never start??
  I am still a newbie on Galaxy. I mapped my RNA-seq reads by TopHat without problem (I believe), ...
• Cutadapt I don't see my list of adapter
  Hello, I have a problem with Cutadapt, I would like use a list of adapter, I have copied my list...