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Question: Input Contain Special Characters
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gravatar for Zhe Chen
8.2 years ago by
Zhe Chen • 20
Zhe Chen • 20 wrote:
Hi, I was implementing a galaxy tool. A problem occurs when my input contains ">", linebreak, galaxy seems traslate them to __gt__, __cr____cn__. Is there a way to stop this translation? Or suggestion to fix this problem? Thanks
galaxy • 549 views
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modified 8.2 years ago by Jelle Scholtalbers • 360 • written 8.2 years ago by Zhe Chen • 20
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gravatar for Jelle Scholtalbers
8.2 years ago by
Jelle Scholtalbers • 360
Germany
Jelle Scholtalbers • 360 wrote:
Hi, take a look at <options sanitize="False"/> as used also in tools/fastq/fastq_manipulation.xml Cheers, Jelle
ADD COMMENT • link written 8.2 years ago by Jelle Scholtalbers • 360
It's worth noting that command line parameters are sanitized for security purposes, so passing them unsanitized should only be done in controlled environments where security is not a concern. Otherwise, parameters should be restored to their original values by the tool or a wrapper around the tool. --nate
ADD REPLY • link written 8.2 years ago by Nate Coraor ♦ 3.2k
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