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• Genome build accession for Galaxy build-in genomes
  How can I find exact genome build (NCBI accession number, like GCA_000001405.17) for build-in gen...
• Adding the reference genome of Aedes albopictus in Galaxy server?
  Hello i am doing miRNA analysis of Aedes albopictus sequence by Galaxy server. I am not able t...
• fetch genome all fasta tool not found in tool shed
  Greetings, I am looking for the fetch-genome-all-fasta tool to install it on local instance of g...
• No chicken reference genome (galGal4) for Bowtie2 - map reads against reference genome
  Hi, I cannot find the chicken (galGal4) reference genome when I run Bowtie2 - map reads against ...
• How to add a genome reference to Bowtie to galaxy project
  I want to map an ostrich RNA-seq data with Bowtie. I want to know where can I find a genome refer...
• How to upload a reference genome
  Hi!, I am a new user in the Galaxy project and I want to map my reads with a genome that is not i...
• Cucumber Genome
  Hi, In the NGS mapping option with "lastz" I cannot find the Cucumber genome.* *Could you please...
• How do I get reference genome?
  There is no reference genome for leishmania in Bowtie2 tool - map reads against reference genome....
• Cucumber Genome
  Hi, In the NGS mapping option with "lastz" I cannot find the Cucumber genome.* *Could you please...
• Data manager for Bowtie for illumina (bowtie1)?
  Is there a bowtie1 index builder? I cant find it in data managers? If not how I can add indexes f...
• How to upload Mouse reference genome mm10, in Fasta format to My Galaxy History
  I tried to use an imported "tuxedo protocol" RNA-seq pipeline from public workflows. I found mous...
• SnpEff C.elegans reference
  I am trying to annotate a vcf file with SnpEff for C.elegans genome. Could you please show me how...
• SAM to BAM of samtools: It can't find built-in reference genome.
  as the title! I installed data manager of samtools index builder. What a strange affair! SAM_to_B...
• Reference genome not in the list
  Hi, I am working on ChIP-seq. I just uploaded my fastq files into galaxy. But i couldn't find t...
• Adding reference genome to Galaxy
  Hi, I want to add reference genome(hg19) from UCSC main table to my Galaxy account,how can I do t...
• Reference Genome Uploading
  hi, I would like to upload the HPV16 W12E genome (AF125673) (human papilloma virus type 16 ) but ...
• Reference Genome for RNAseq analysis
  Hi,   I was hoping to use Galaxy for some RNA-seq data isolated from the cultivated tomato, but...
• Gain Sequences After Mapping Reads To A Reference Genome
  Hi all, I would like to know if mapping reads to a reference genome, through galaxy, can generat...
• How to upload a genome from igenomes to Galaxy?
  As above - how can I directly upload a reference genome from http://cufflinks.cbcb.umd.edu/igenom...
• HiSAT2 alignment to GRCm38? in Galaxy -- where to find mm10 reference annotation
  I am doing an RNA-seq experiment and I ran HiSAT2 with the mm10 reference genome. Then in order t...
• Tuxedo_Custome build genome
  I have uploaded tomato genome in GFF3 and FASTA format in galaxy. However, when I run Tuxedo, my ...