Question: Index Brassica napus at http://usegalaxy.org (use Custom Genome near-term)
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gravatar for villayatbotcup786
15 months ago by
villayatbotcup7860 wrote:

Dear sir, i am working on galaxy from last one months and i am very well appraise with the performance and its feasibility for a non computational guy. I am using tophat gapped-read mapper .. for align Brassica napus unfortunately my interest genome is not list on galaxy. Please upload the reference genome of brassica napus on galaxy.

Best Regards

ADD COMMENTlink modified 15 months ago by Jennifer Hillman Jackson23k • written 15 months ago by villayatbotcup7860
0
gravatar for Jennifer Hillman Jackson
15 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

The genome can be used with tools right now as a Custom Reference Genome. This is how:https://wiki.galaxyproject.org/Support#Custom_reference_genome

New genomes for indexing are under consideration. Request are accepted at this ticket - please follow the instructions in the top post. These will not be immediately added, so use a Custom Genome near-term. https://github.com/galaxyproject/galaxy/issues/1470

Thanks, Jen, Galaxy team

ADD COMMENTlink written 15 months ago by Jennifer Hillman Jackson23k

hello, Thanks a lots for your above link instruction i go through it and learn lots of things .

That,s great to know. Regards villayat Ali

ADD REPLYlink written 15 months ago by villayatbotcup7860
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