Question: Sam to Bam conversion
gravatar for chiaanye
3.4 years ago by
chiaanye0 wrote:

I followed the galaxy tutorial for mapping genome sequencing data. I mapped my paired end sequencing data and filtered the resulting sam file. When I get to the step to convert sam to bam file. I ended up with a 92 byte file size and an error message that goes:

[E::sam_parse1] missing SAM header [W::sam_read1] parse error at line 1 [bam_sort_core] truncated file. Continue anyway.

Please let me know what should I do. Thanks!

galaxy samtools • 967 views
ADD COMMENTlink written 3.4 years ago by chiaanye0
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