Question: Help With Sam To Bam
0
Zachary A Lewis • 10 wrote:
Hi,
I was wondering if someone could help me with an error message I'm
getting after performing a sam to bam conversion in galaxy. I've used
Bowtie to map sequence reads to a custom fasta file corresponding to
one chromosome in my organism. The mapping seems to work fine, but
when I attempt a sam to bam conversion, I receive the folowing error
message:
An error occurred running this job: Samtools Version: 0.1.12 (r862)
Error creating indexes from reference
(/galaxy/main_database/files/002/977/dataset_2977193.dat),
[fai_build_core] line length exceeds 65535 in sequence 'LGVII'.
Segmentation fault
Any help would be appreciated.
Thanks,
Zack
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modified 7.2 years ago
by
Austin Paul • 140
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written
7.2 years ago by
Zachary A Lewis • 10
