Question: Missing genome for SAM-to-BAM conversion
gravatar for nicholas.anthony
16 months ago by
nicholas.anthony0 wrote:


I have a SAM file of aligned RNA-Seq reads that I need to convert to a BAM. Problem is, when I try to use SAM-to-BAM conversion, there aren't any genomes listed in the dropdown, and I'm having trouble finding the mouse mm9 genome in a format that Galaxy understands. I feel like the mouse mm9 genome should already be available on Galaxy. Is there a way to find and upload it so that I can shrink this unwieldy file?



ADD COMMENTlink modified 16 months ago by Jennifer Hillman Jackson23k • written 16 months ago by nicholas.anthony0
gravatar for Jennifer Hillman Jackson
16 months ago by
United States
Jennifer Hillman Jackson23k wrote:


Assuming that you are working at, assign the "database" for the dataset to be "mm9" and the same genome will appear in the drop-down menu on the form.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 16 months ago by Jennifer Hillman Jackson23k
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