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Question: (Closed) wiggle file format
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gravatar for hss
2.3 years ago by
hss • 20
United States
hss • 20 wrote:

Hello,

For some reason my wig files are not being properly converted to bigWig format when I merge them into a single file.

Here is an example of a merged file of the my ChIPseq data for the mouse Y and M chromosomes

https://s3-us-west-2.amazonaws.com/hoxa13-gt-chipseq/Input/M+and+Y+concatenate wig file

The Wig headers look ok to me based on what I read in the UCSC Genome Browser guide.

Hopefully someone can spot my mistake.

thank you, Scott
format galaxy wig-to-bigwig input • 762 views
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modified 2.3 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.3 years ago by hss • 20

Hello hss!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

PS: Please see the extended comments at the initial post. In short: do not concatenate before using the tool and add track lines (at least one input was missing this header in the bug report sent in). Runs with single inputs/track lines were successful.
ADD REPLY • link modified 2.3 years ago • written 2.3 years ago by Jennifer Hillman Jackson ♦ 25k
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